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TimeItemWhoNotes
GrainGenesTaner

 

 PolyMarker errors in primer design
 Primer Filter shiny-server from Noah
 T3Davidwheat yield conversion
WI oat synonyms 
 BreedBase GBS protocol
 PHGClayreference ranges for exome - use all exome SNPs (no minimum size) and gene models
  • merge window of 100,000 gives 43,000 intervals
  • merge window of 10,000 give 155,000 intervals

test PHG database

  • uses 1A, 1B, 1D chromosomes and intervals
  • uses first 1,000,000 lines of gVCF files for 10 accessions
  • takes 20 min to load intervals then 1 hour for each of the truncated gVCF files 

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