Date

Attendees

Goals

Discussion items

TimeItemWhoNotes
GrainGenesTaner

working on non-iframe JBrowse

 PolyMarker errors in primer design
 Primer Filter shiny-server from Noah
 T3Davidwheat yield conversion
WI oat synonyms 
 BreedBase GBS protocol
 PHGClayreference ranges for exome - use all exome SNPs (no minimum size) and gene models
  • merge window of 100,000 gives 43,000 intervals
  • merge window of 10,000 give 155,000 intervals

test PHG database

  • uses 1A, 1B, 1D chromosomes and intervals
  • uses first 1,000,000 lines of gVCF files for 10 accessions
  • takes 20 min to load intervals, then 1 hour for each of the truncated gVCF files 

Action items