2018-02-14 Meeting notes

genotypic and phenotypic datasets on T3
GWAS and GS papers
aligned to RefSeq_0.4
need to load 2015 GBS data 

• Flapjack v1.18 Beta working with BrAPI
• WheatIS
  
  • plans for moving germplasm and phenotypes to BrAPI
  • barley data can be loaded
• BrAPI Apps -
  
  • ontology, pedigree, study comparison,
  • R package - BMS uses this for statistical analysis
  • HIDAP https://research.cip.cgiar.org/gtdms/hidap/
  • Gigwa http://www.southgreen.fr/content/gigwa

training June
do we need Fasta files, who from wheat, PanGenome?
can we use 2014_HapMap_WEC from Eduard? Align to refseq_v1
start with fasta/bam files