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Increase computational capacity for Crane's group.
Brian Crane

Karen

Lulu

Options


Current activity

8/27/13Tue: Oliver met with Brian Crane

  • Brian Crane agreed to wait, allowing ChemIT to start and focus on Hoffmann's new cluster instead.
  • Crane will email Kyle Lancaster with an update. Plan is to move forward with retrofit of Lancaster's cluster, pending Kyle's approval. No need for interim solution from ChemIT.
  • Oliver to meet with Kyle to review steps and timing in more detail.
  • Having come close to completing Collum's cluster retro-fit, Oliver estimates Lulu being able to start in ~8 weeks. BUT, we can and should start work with Brian and designates much earlier (4 weeks earlier!) to spec and order hardware so it can be ready for Lulu to work with in ~8 weeks.
  • Oliver to provide Crane a status report every 2-3 weeks, until we start
  • Idea: Have Lulu install SBGrid on Lancaster's cluster so Crane's group can test. This might help inform hardware spec if bottleneck(s) identified using Lancaster's current compute nodes.
    • Oliver to discuss idea with Lancaster. Then, determine when Lulu would have time to invest in this installation.

Previously shared activity and ideas

From ~3/13:

1) CRCF to advise on what system would work. Do within 2 weeks of 3/4/13. RedBarn and Dell. Informed by applications used. ~$5K.

2) CRCF to explore possible opportunities for mutual benefit, including:

  • CRCF provision a shared head node so researchers only need to invest in compute nodes.
  • Discuss with existing cluster owners if they'd prefer we "add" to theirs and share, rather than remain stand-alone. Example is Kyle's cluster.

Applications and other software required

Rosetta (Compiler: gcc, g++, Scons)

Gaussian

ORCA - DFT Free

Sbgrid

Charm-based s/w

FireFly - QM/MM Free

ADF

NAMD - MD Free

QSIH

TINKER

MOLCAS

GRUMACS

Notes

8/27/13Tue: Oliver met with Brian Crane (notes, above).

End of July 2013: Oliver met with Crane, reviewing likely options and time. Agreed on next check-in in ~ 1 month.

3/4/13: First meeting, Crane and Oliver. Characterize needs, explore some alternatives, and define next steps.

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