Date

Attendees

Goals

Discussion items

TimeItemWhoNotes
 GrainGenesTanerpaper accepted, starting work on JBrowse
 breedbase 

genotype data

  • need to subset files over 90MB, Lucas is working on new loading script
  • each experiment should have separate protocol and project (required for download and analysis)
  • need a method to check/QC loaded genotype data (vcf-stats from VCFtools?) 

download page - error loading page "breeders/download"
- /ajax/html/select/genotyping_protocols (not found)

map viewer - added Comparative Map Viewer, slow working with large maps 

 T3 Oat cropontology.org
how to add entries?
 T3 gene annotationClay
  • using BioMart v43
  • added InterPro description
  • Gene ontology is limited because many UniProt links are deleted, this should be fixed in next release 
 T3 markersClayUniform marker names
t3 marker 168K 
 T3 BLASTClayweb blast temporary files filling hard drive, now old files removed daily

Action items