Do this by creating and running a Jenkins job with the following for Bash script:
$JAVA_HOME/bin/keytool -noprompt -genkeypair -alias saml-key \
-keypass changeit \
-storepass changeit \
-keystore /var/jenkins_home/saml-key.jks \
-keyalg RSA -keysize 2048 -validity 3650 \
-dname "CN=jenkins.example.cucloud.net" |