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Date

23 Mar 2016

Time	Item	Who	Notes
5min	genotype experiments, output format	Jean-Luc	report on what analysis functions work across all genotype calls available versus just on the consensus allele calls, and also on how easily we can adapt functions to showing nucleotide information rather than Illumina A/B.
	system	Clay	website passed vulnerability scan received quote for UPS connection
	Oat	Clay	loaded on T3 but waiting for a fix for marker naming error

	works with genotype experiments	Ouput Format
Selection
Lines by Haplotype	No	Illumina
Lines by Genotype Experiment	Yes
Markers	Yes

Analyze
Cluster Lines by Genotype	No
Cluster 3D pam	No
Cluster 3D hclust	No
GWAS	Yes
Allele Data Conflicts	No	Illumina
BLAST	Yes
Haplotype Data	No	Illumina

Download
Genotype and Phenotype Data	Yes	all types
Imputed	Yes	VCF
SNPS and sequence	Yes