Overview

GBS Database Schema

• GBS DatabaseSchema Image
• based on The Genomic Diversity and Phenotype Data Model (GDPDM)

sample submission interface fields and database schema

• full sample submission site archive with docs
• sample submission site screenshots

QC Scripts

• QC Scripts

"SampTrack" C# windows program to interface with GBS for setting up pools etc.

• manual SQL queries (supplement "samptrack")
  • desire to have functionality build in
• SampTrack screenshots and notes

redmine project management

• Project initiation
  •   create project in redmine

• Individual plate tracking
  • Can note if a plate failed somewhere in the process and link it to the redone plate.
  • Can link billing information so we know if the plate has been paid for
• I don't like:
  • Having to click through so many screens to get to the next sample in a project
  • Hard to look at samples in groups, like all of the samples on a flowcell

Data Distribution

• manual
  • either "hapmap table" by email, or dropbox or physical hard drive if client wants raw data

billing

current billing workflow

*invoicing handled through LSCLC cores LIMS

Theresa's comments on GBS billing issues

Misc operations

• Configure new adapter plate configurations
  • example adapter plate spreadsheet