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Created by
Clayton L Birkett, last updated on Jun 19, 2019
1 minute read
Date
Attendees
Goals
Discussion items
| Time | Item | Who | Notes |
|---|---|---|---|
| GrainGenes | Taner | update | |
| Knetminer | new release? | ||
| PolyMarker | updated primer design file | ||
| gVCF files | filtering heterozygous SNPs QUAL - Phred-scaled quality score filtering: 75% of data present and only biallelic snps. We removed heterozygous sites and kept only those singletons that had depth of coverage of 10+.
| ||
| PHG | Practical Haplotype Graph
|
Action items
- Clayton L Birkett - put gVCF on public drive
- Clayton L Birkett - is read depth higher for homozygous snps?
- Clayton L Birkett - vcf to hapmap for flapjack
- Clayton L Birkett - ask Gina if she can select wheatcap lines