Date

Attendees

Goals

Discussion items

TimeItemWhoNotes
JBrowse 
  • waiting for GrainGenes switch to new JBrowse (v15.4)
  • where will T3 logo appear in GrainGenes JBrowse
  • separate track for each platform or map
 T3 survey 

more tutorials
identifying markers across platforms 

 Data LoadingDavid 
 KnetMiner is it useful
best way to access
GWAS updates for new release of Knetminer
 Ensembl Plant v42 

gene annotations
inter-Homeologous Variants (3.6 million Inter-Homoeologous Variants (IHVs) called by alignments of the A,B and D component genomes), Polymarker uses this information already

 GWAS use genome assembly position for markers
 collaboration 

working with Thomas Walk, NDSU
Oat - Dr. Jessica Schlueter

 big projects 

triticumbase

  • trait ontology
  • loading phenotype data
  • loading genotype data
practical haplotype graph

Action items

  • Clayton L Birkett - create map for HapMap platform, add to JBrowse, then create tutorial on how to select markers from all platforms on Browse
  • Clayton L Birkett - indicate platform in GWAS
  • Clayton L Birkett - ask Keywan how many T3 genes link to other resources (need protein, description, ontology....)
  • Clayton L Birkett - add description/pictures for VEP terms