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TimeItemWhoNotes
GrainGenes update  
 T3 updateClay
  • update JBrowse to 1.12.4, minor improvements and bug fixes
  • RefSeq_v1 public access
  • RefSeq_v1 gene annotation v1.1
 Bulk downloadClayLines Records, Line Records in POOL
 Variant EffectsClayadded tutorial
added transcript variants
 PHG 
  • 67 fastq from Kansas State Univ (EBI - ENA) Study: PRJNA227449
    genotyping-by-sequencing (GBS) and exome capture on Illumina HiSeq 2000
  • 298 fastq from Kansas State Univ (EBI -ENA) Study: PRJNA309190
    genotyping-by-sequencing (GBS) on Illumina HiSeq 2000
  • 17 fastq from Australia bpa-wheat-cultivars
  • 199 Watkins bread wheat landrace collection (EBI - ENA) Study: PRJEB23320
    gene based sequence capture (12Mb) to focus on the functionally relevant portion of the genome, followed by paired end sequencing on the Hiseq4000

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