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TimeItemWhoNotes
GrainGenes updateTaner

 

 T3 Clay

1000 exomes genotype

experiments page

experiment page
select lines
link to download vcf

 T3Vic1000 exomes passport data
 T3Clay

primer selection shiny-server http://tcapg.ag.cornell.edu/primer_filter/

 new T3BreedBase 2011-13 genootype genotype experiments loaded
 Wheat PHG Clayoptions for reference intervals (GBS, Exome, gene model)
  • what is minimum size? 25 bases
  • which intervals to combine? 10,000 bases

GBS + Exome + gene model - 250,000 reference ranges
Exome + gene model - 120,000 reference ranges 
TASSEL functions 
exclude gene models if no exome or GBS sequence
 

 GOBii Clayprogress on new install 

Action items