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Discussion items

TimeItemWhoNotes
JBrowse
  • wheat pangenome - T3 markers track, gene presence track
barley
oat
  • limit of 2^29 or 536,000,000 bases for indexing vcf file using tabix
  • barley Morex assembly by Martin Mascher published, should be okay to publish on T3
 Knetminer links from T3 - design

how should we link from T3 to Knetminer
link from gene
link to nearest gene
all genes within specified distance of marker
use markers sequence for BLAST so gene name not needed

 Plant Reactome links from T3 - verifygene representation in pathway is easier to understand in new reactome release
 AgBioData paper T3 installation documentation updated

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