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TimeItemWhoNotes
GrainGenesTaner

update

 Knetminer new release
 gVCF files 

filtering heterozygous SNPs

QUAL - Phred-scaled quality score
DP - depth
GQ - genotype quality
MQ - mapping quality

filtering: 75% of data present and only biallelic snps. We removed heterozygous sites and kept only those singletons that had depth of coverage of 10+.

 

 PHG Practical Haplotype Graph new CreateConsensi script

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