| | works with genotype experiments | Ouput Format |
| Select | | |
| Wizard | | |
| Lines by Properties | | |
| Lines by Phenotype | | |
| Lines by Haplotype | No | Illumina |
| Lines by Genotype Experiment | Yes | |
| Traits and Trials | | |
| Markers | Yes | |
| Genetic Map | | |
| Clear selection | | |
| | | |
| Analyze | | |
| Cluster Lines by Genotype | No | |
| Cluster 3D pam | No | |
| Cluster 3D hclust | No | |
| Selection Index | | |
| Traits and Trials Histogram | | |
| Traits and Trials Box Plot | | |
| Traits and Trials Table | | |
| Canopy Spectral Reflectance | | |
| GWAS | Yes | |
| Compare Trials | | |
| Track Alleles through Pedigree | | |
| Parse Purdy Pedigree | | |
| Allele Data Conflicts | No | Illumina |
| BLAST | Yes | |
| Haplotype Data | No | Illumina |
| | | |
| Download | | |
| Genotype and Phenotype Data | Yes | all types |
| Imputed | Yes | VCF |
| SNPS and sequenc | Yes | |
| Marker Annotation | Yes | |
