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When you go to the Status page of your VM to stop/start services, you will see an Apache instance as well as a Tomcat instance. In most cases, if you make changes to Coldfusion (via Coldfusion Administrator, or add new jar files) you'll only need to restart the Tomcat service (CF9 would have restarted the JRUN service).
Apache will need to be restarted if you've created a Custom Apache Include file.
Coldfusion Administrator (CFAdmin)
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