Page History

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• Rob Elshire and IGD generate minimum distribution information standard
• Theresa defines details of billing dashboard page
• IGD create lists of pages (data objects and dashboards?)
• Charlotte detail spec for workflow
• IGD detailed sample submission spec
• IGD define roles and authorization levels for each page
• James define APIs for billing and ordering integration with CLC LIMS

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GBS Paper in PLoSone: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0019379

Workflow Image Added

1. Project Initiation
   • Requires personal contact with lab director
   • Charlotte or Sharon sets up project in redmine
2. Sample submission: client goes to http://sorghumdiversity.maize.cornell.edu/ to get the required steps, and upload their information to attempt to get approved to send DNA samples
3. Client sends DNA samples to the lab
4. Client sets up customer registration at https://cores.lifesciences.cornell.edu/userdev/newuser.php
5. DNA samples tested and if okay, Charlotte sets up a cost issue in redmine so Theresa knows what to bill.
6. Customer is invoiced
7. DNA samples begin moving through various lab steps; redmine updated at various steps
8. SampTrac is used to update HTS database entries and create barcodes for DNA and library plates.
9. Libraries are submitted for sequencing (sometimes more than once)
10. Raw Data -> Data Files
    • QC scripts run
    • Pipelines change can be Tassel, or Fei Li's pipeline
11. Data Interpretation
    • need to know Biology / skilled analyst
12. Data Distribution
13. Data storage for X period of time

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