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- Am excited by the possibility of pulling reports off the Illumina machines to further our QC. I was also introduced to a Java based program, FastQC, which may be helpful for us.
Data Distribution
- no changes required at this time ???
- - possibly change SOP to record that data was released-
- Our current scope does not include any changes to data distribution, which is currently done manually via dropbox or hard drive.
- 1) We will need to produce a detailed specification for the information/format of data and metadata distribution
- Rob Elshire will be producing a standard for information (In my mind I think of it like MIAME or MIAPE standards) - this should be able to help us produce the spec
- there may be different definitions for different classes of customers
- customers that receive only sequence data and metadata about panel etc (is "key file" a standard term?)
- customers for whom the facility has produced genotypes. they may or may not also want the sequence data.
- Do we want to consider a mechanism that defines the contents of an archive file that can be accessed via web link, including programmatically (curl or wget)
- 1) We will need to produce a detailed specification for the information/format of data and metadata distribution
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